MmuALTA0012236-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56456750-56458653:-
Coord C1 exon
chr19:56458549-56458653
Coord A exon
chr19:56456855-56456857
Coord C2 exon
chr19:56456750-56456854
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GCTGCCGTGGTTCTGACCAGCAG
3' ss Score
3.05
Exon sequences
Seq C1 exon
AGAGACTACTGGCCAGGGTATGCAGAAGGGAACACTTGGTGTCCAGGAGCTCTGCCGGACCCTGAGATTGTAAGGATGGTTGAAGCTCGACAGTCTCTCGGTGAG
Seq A exon
CAG
Seq C2 exon
GGGTACACAGAAGACCGTGAACAGCAGCAGGGCAAGGGGAGCTTTCCAGCCATGATCACCCCTGCCTACCAAAGGGCCAAGGCAGCCAACCAGCTGGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTTGGTGTCCAGGAGC
R:
CTGCTGTTCACGGTCTTCTGT
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: