MmuALTA0012538-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030162 | Olr1
Description
oxidized low density lipoprotein (lectin-like) receptor 1 [Source:MGI Symbol;Acc:MGI:1261434]
Coordinates
chr6:129499907-129502180:-
Coord C1 exon
chr6:129502079-129502180
Coord A exon
NA
Coord C2 exon
chr6:129499907-129500072
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
AAGCGAACCTTACTCAGCAGGAT
3' ss Score
0.81
Exon sequences
Seq C1 exon
GTCTGCATTTGCTTTCTTCCCCATGGTGGTTCCCTGCTGCTATGACTCTGGTCATCCTCTGCCTGGTGTTGTCAGTGACCCTTATTGTACAGTGGACACAAT
Seq A exon
NA
Seq C2 exon
GATCGTATCCTGGAAGGGCAGATGTTAGCCCAGCAGAAGGCAGAAAACACTTCACAGGAATCAAAGAAGGAACTGAAAGGAAAGATAGACACCCTCACCCAGAAGCTGAACGAGAAATCCAAAGAGCAGGAGGAGCTTCTACAGAAGAATCAGAACCTCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030162-3-8,3-7,3-6-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.808
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGGTCATCCTCTGCCT
R:
TGTTTTCTGCCTTCTGCTGGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types