MmuALTA0012645-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119272929-119284687:-
Coord C1 exon
chr9:119284546-119284687
Coord A exon
chr9:119272983-119272984
Coord C2 exon
chr9:119272929-119272982
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TGGTGTTTTTTTCTTTGAAGAGA
3' ss Score
6.52
Exon sequences
Seq C1 exon
GTTCTGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGAGTGGAGTTCTGGACGAGCCAACCATTGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCATAAGAATGGGCAGATTCACAG
Seq A exon
AG
Seq C2 exon
ATGTGAAAGCTGGAAACATTCTTCTAGGAGAAGACGGCTCTGTGCAGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-15-17,15-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACTGGAGTACCTGCA
R:
CAATCTGCACAGAGCCGTCTT
Band lengths:
93-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types