MmuALTA0013386-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000054065 | Pkp3
Description
plakophilin 3 [Source:MGI Symbol;Acc:MGI:1891830]
Coordinates
chr7:141078218-141080101:+
Coord C1 exon
chr7:141078218-141078434
Coord A exon
NA
Coord C2 exon
chr7:141079951-141080101
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CTCTGCCTTCGGACCTACAGCTG
3' ss Score
7.83
Exon sequences
Seq C1 exon
GCAACCGGTCTGATGAGATGGGTGTGCAACGTTCCCACCCCACCCTCGGGTGCCCCCACGGTACCATCTCCAAACAGAGGCTGTTGCCCACAGAAGCTGGGCCCTGATGGAGCCCACCGCAGGATCTCGGACCCGGATGGAGCCCAGAAGGAATTGTCCTACAGCAGGGACCTCCAGAATGAGCCAGGGAGCCAGTGGGGGCCAGACCAGCGGCAAG
Seq A exon
NA
Seq C2 exon
CTGGATCGCCGGGGTGCGGAGGGACCGGAGGCTGATCGACTTAGAGCTGCCAGAGTCCAGGAGCAAGTCCGAGCCCGCCTCCTGCAGCTGGGCCAGCAGTCGCGGCACAATGGGTCTGCTGAGCTTGATGGCTCCGCGGAGAGCGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054065-0-5,0-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCAGAAGGAATTGTCC
R:
CCTGGACTCTGGCAGCTCTAA
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types