MmuALTA0013386-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000054065 | Pkp3
Description
plakophilin 3 [Source:MGI Symbol;Acc:MGI:1891830]
Coordinates
chr7:148264117-148266000:+
Coord C1 exon
chr7:148264117-148264333
Coord A exon
chr7:148265805-148265849
Coord C2 exon
chr7:148265850-148266000
Length
45 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TCCTGCTGTCTGCCCTGCAGCCT
3' ss Score
9.21
Exon sequences
Seq C1 exon
GCAACCGGTCTGATGAGATGGGTGTGCAACGTTCCCACCCCACCCTCGGGTGCCCCCACGGTACCATCTCCAAACAGAGGCTGTTGCCCACAGAAGCTGGGCCCTGATGGAGCCCACCGCAGGATCTCGGACCCGGATGGAGCCCAGAAGGAATTGTCCTACAGCAGGGACCTCCAGAATGAGCCAGGGAGCCAGTGGGGGCCAGACCAGCGGCAAG
Seq A exon
CCTGAGACTGGTGTTTGCTCCCTGGCTCTGCCTTCGGACCTACAG
Seq C2 exon
CTGGATCGCCGGGGTGCGGAGGGACCGGAGGCTGATCGACTTAGAGCTGCCAGAGTCCAGGAGCAAGTCCGAGCCCGCCTCCTGCAGCTGGGCCAGCAGTCGCGGCACAATGGGTCTGCTGAGCTTGATGGCTCCGCGGAGAGCGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054065-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCAGAAGGAATTGTCC
R:
CCTGGACTCTGGCAGCTCTAA
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: