Special

MmuALTA0013862-1/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69584085-69587154:+
Coord C1 exon
chr2:69584085-69584172
Coord A exon
NA
Coord C2 exon
chr2:69587038-69587154
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CGTTATCGAACTCCTTCCAGATC
3' ss Score
7.92
Exon sequences
Seq C1 exon
TAATCCACCTAACTCCCAGCCTGCTTCATACCAGCGACGATTCTTAGTTACTAGGTCTGGCAGGAAAATTAAAGGAAGAGGACCGAGG
Seq A exon
NA
Seq C2 exon
ATCCAGATCGAGGGATCGATTCAGACGAAGTGAGACTCCTCCACATTGGAGACAAGAGATGCAGAGAGCTCAGAGAATGAGGGTGTCAAGTGGTGAAAGATGGATCAAAGGGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-24-29,24-28,24-27-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence exclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000045945





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000088370
  



Associated events






Conservation


Human
(hg38)
chr2:169636112-169636162 
LOW PSI
HsaALTA1029393-1/2
(PPIG)
Human
(hg19)
chr2:170492620-170492621 
Rat
(rn6)
chr3:55986245-55986361 
LOW PSI
RnoALTA0030468-1/2
(Ppig)
Cow
(bosTau6)
chr2:26696948-26696949 
Chicken
(galGal4)
chr7:18117529-18117530 
LOW PSI
GgaALTA1001322-1/2
([1])
Chicken
(galGal3)
chr7:20081322-20081323 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTGCTTCATACCAGCGACGAT

				
R: 
TGTGGAGGAGTCTCACTTCGT

				
Band lengths: 
113-133

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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