MmuALTA0014034-1/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000025838 | Pramel6
Description
preferentially expressed antigen in melanoma like 6 [Source:MGI Symbol;Acc:MGI:2156390]
Coordinates
chr2:87346722-87347294:+
Coord C1 exon
chr2:87346722-87346786
Coord A exon
NA
Coord C2 exon
chr2:87347231-87347294
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTGTTTATTTTTGCGACAGTCC
3' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGCCACTTGGAGTCACCACTTATCGATGCTGGGATCTAGAGATTTTTACCGTGTTCAAATCAG
Seq A exon
NA
Seq C2 exon
TCCCACTCTGTATATCAAGGTGGCATTGAACTCCAGGAAGGAAATTCTGAGGGGAGTTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025838-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCACTTATCGATGCTGGG
R:
CCCCTCAGAATTTCCTTCCTGG
Band lengths:
106-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: