Special

MmuALTA0014273-2/3 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162709533-162710829:-
Coord C1 exon
chr1:162710283-162710829
Coord A exon
chr1:162709618-162709683
Coord C2 exon
chr1:162709533-162709617
Length
66 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACTGTTTCTTTGAGCAGAAGAAG
3' ss Score
-9.3
Exon sequences
Seq C1 exon
TCCCTCCAAGCCTCCAGTACCTGATAACGATGAAATATGGAAGCAAAGACGAAAACAACAGTCTGAAATATCTGCAGCAGTAGAGCGTGCTCGTAAACGCCGTGAGGAGGAAGAGCGAAGGATGGAGGAACAGAGGAAGGCAGCGTGCGCAGAGAAATTGAAGCAGCTGGATGAGAAGCTCGGGATCATAGAAAAGCAGCCATCTCCAGAGGAACTTAGAGAAAGGGAGAGAGAGAAGGAGCGGGAGAGAGAACTTGAAAAAGAGAAAGAGCGGGAGCTTGAGAAAGAGCAGGAAAAGCAGAGGGAAATGGAGAGGGCAAGACAGCAAGAGAAAGAGTTAGAACAACAGAGAGAAAAGGAGCAGGAACTACAAAGGCTGAGAGAACAGGAAAAGGAGGGCGAGCCAAAGGAACAGGAAAAAGAGGAAAAAGTTGAACCCCAAGAGCCTGTTGTAGAGCCTGCGACAGAAAACCAAGAAAGTGAAAACAACTGCAAGAAAG
Seq A exon
AAGAACCAATTTTCACTAGGCAGGACAGCAATCGCAGTGAAAAGGAGACCACACAAGTGGTACAAG
Seq C2 exon
AAGCAGAACCTGAATCGGGGGCTCAACCTCGACCTGGCTATTTCAAACAGTTTCAGAAATCATTGCCACCACGATTTCAGCGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-27-28,27-27,27-26-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000138433





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000028016, ENSMUSP00000138548, ENSMUSP00000138674
  



Associated events






Conservation


Human
(hg38)
chr1:171535429-171535430 
Human
(hg19)
chr1:171504568-171504569 
Rat
(rn6)
chr13:80581087-80581088 
Cow
(bosTau6)
chr16:39893579-39893580 
Chicken
(galGal4)
chr8:4752365-4752468 
ALTERNATIVE
GgaALTA1025551-1/2
(PRRC2C)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr20:15153979-15153980 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCGAGCCAAAGGAACAGGAAA

				
R: 
GCTGAAATCGTGGTGGCAATG

				
Band lengths: 
183-249

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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