MmuALTA0014299-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000049013 | Prss48
Description
protease, serine, 48 [Source:MGI Symbol;Acc:MGI:2685865]
Coordinates
chr3:85801134-85802235:-
Coord C1 exon
chr3:85801976-85802235
Coord A exon
NA
Coord C2 exon
chr3:85801134-85801300
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTCCCCGGCTTCCTGTGCAGGTC
3' ss Score
11.38
Exon sequences
Seq C1 exon
GACCTGGTACAGTTTTCTATACAGTGTGTGGCTTGGATCCATCGATAGAGAGTACTCAAGCACAGGCAAAGAATACTATGTGTCCAGAATCGCCATCCCCGACAAACACCGCCACACAGAAGCAGACATCGCCCTGCTGAAGCTGTCTTCCCGGGTCACCTTCTCATCGGTCATTCTGCCCATCTGCTTGCCCAATATCTCAAAGCAGCTGACAGTTCCAGCTTCTTGCTGGGTGACTGGATGGGGACAAAATCAGGAAG
Seq A exon
NA
Seq C2 exon
GTCACTACCCCTCTACCCTCCAAGAACTTGAAGTGCCTGTCATTTCCAGTGAGGCGTGTGAACAACTCTACAACCCAATTGGTGTCTTCCTCCCGGATCTGGAGCGGGTCATCAAGGAAGACATGTTCTGTGCTGGTGAGAGGCAGTCGAGGAAGGATAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049013-3-4,3-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCGGTCATTCTGCCCA
R:
ATCCTTCCTCGACTGCCTCTC
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: