MmuALTA0014305-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000020323 | Prssl1
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79246044-79247354:-
Coord C1 exon
chr10:79247091-79247354
Coord A exon
chr10:79246145-79246205
Coord C2 exon
chr10:79246044-79246144
Length
61 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGA
5' ss Score
7.72
3' ss Seq
CAAACTTTTTTTCACTCCAGGCA
3' ss Score
7.9
Exon sequences
Seq C1 exon
TTGAACGGCTCTGCTGTCCTGGGCCCCGCTGTGAGGCTATTACGATTGCCTCGGAGAAATGCTAAGCCACCTGCTGCGGGCACGCGTTGCCATGTATCCGGCTGGGGCTTCGTGTCTGACTTTGAGGAGCCTCCGCCTGGACTGATGGAAGTCGAGGTGCGCATACTGGATCTGAGTGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAATCCTGCCATGCTCTGCACTCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
Seq A exon
GCAGATTCTGGGGGACCCTTGGTCTGTGGAAGACGGGCCCATGGTCTTGTATCTTTCTCAG
Seq C2 exon
GCCTCTGGTGTGGTGACCCCAAGACTCCGGATGTCTACACTCAAGTGTCAGCGTTTGTGACCTGGATCTGGGATGTGGTTCGGGCAAGTTCATCCCCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(97.3=98.6)
A:
NA
C2:
PF0008921=Trypsin=PD(1.3=4.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCGCATACTGGATCTGAG
R:
TAGACATCCGGAGTCTTGGGG
Band lengths:
146-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: