MmuALTA0014305-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020323 | Prss57
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79783299-79784609:-
Coord C1 exon
chr10:79784346-79784609
Coord A exon
chr10:79783400-79783460
Coord C2 exon
chr10:79783299-79783399
Length
61 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGA
5' ss Score
7.72
3' ss Seq
CAAACTTTTTTTCACTCCAGGCA
3' ss Score
7.9
Exon sequences
Seq C1 exon
TTGAACGGCTCTGCTGTCCTGGGCCCCGCTGTGAGGCTATTACGATTGCCTCGGAGAAATGCTAAGCCACCTGCTGCGGGCACGCGTTGCCATGTATCCGGCTGGGGCTTCGTGTCTGACTTTGAGGAGCCTCCGCCTGGACTGATGGAAGTCGAGGTGCGCATACTGGATCTGAGTGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAATCCTGCCATGCTCTGCACTCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
Seq A exon
GCAGATTCTGGGGGACCCTTGGTCTGTGGAAGACGGGCCCATGGTCTTGTATCTTTCTCAG
Seq C2 exon
GCCTCTGGTGTGGTGACCCCAAGACTCCGGATGTCTACACTCAAGTGTCAGCGTTTGTGACCTGGATCTGGGATGTGGTTCGGGCAAGTTCATCCCCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323-19-12,19-11,19-10-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(97.3=98.6)
A:
NA
C2:
PF0008921=Trypsin=PD(1.3=4.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCGCATACTGGATCTGAG
R:
TAGACATCCGGAGTCTTGGGG
Band lengths:
146-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types