MmuALTA0014748-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99456618-99456988:-
Coord C1 exon
chr15:99456893-99456988
Coord A exon
chr15:99456799-99456808
Coord C2 exon
chr15:99456618-99456798
Length
10 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTCATCTCTATAACAGGCAGGCT
3' ss Score
-0.88
Exon sequences
Seq C1 exon
GGCATGCTGGCCGACTTCGTGTCGCAGGCTTCTCCCATGATCCCTGCCATTGTCGTCAGCTGTGTCAATGAGATCGAGCAGCGAGGCCTGACTGAG
Seq A exon
GCTTGTACAG
Seq C2 exon
GATCTCAGGCTGTGACCGCACAGTGAAAGAACTGAAAGAAAAATTCCTTAAGGTGAAAACTGTGCCCCTCCTCAGCAAAGTGGACGATATCCACGTCATCTGCAGCCTCCTGAAGGACTTCCTGCGCAACCTCAAAGAGCCCCTCCTGACCTTCTGGCTGAGCAAAGCCTTCATGGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-30-22,30-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(11.3=53.1)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAATGAGATCGAGCAGCG
R:
GAGGAGGGGCACAGTTTTCAC
Band lengths:
107-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: