Special

MmuALTA0014813-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33002090-33014556:-
Coord C1 exon
chr2:33014430-33014556
Coord A exon
NA
Coord C2 exon
chr2:33002090-33002170
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
CTCCCTTTCCTCTGAAGCAGGGG
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCCCCTCTGCCGGCTCCAGCTCAGCCAGGTTCCGCCGGAGGCCCACCTGTCCAGATACATCTGTGGCCGGCAGCCTCCCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAA
Seq A exon
NA
Seq C2 exon
GGGACGTCTTTATGCCACGCTGGGACCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831-17-18,17-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.935 A=NA C2=0.245
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000048451





     
                   









    
Main Skipping Isoform:
ENSMUSP00000108792





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000108790
          









    
Other Skipping Isoforms:
ENSMUSP00000088563, ENSMUSP00000118363
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:129972977-129973057 
ALTERNATIVE
HsaALTA0006978-1/2
(RALGPS1)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:97966669-97966749 
ALTERNATIVE
BtaALTA0024415-1/2
(RALGPS1)
Chicken
(galGal4)
chr17:10356376-10356456 
HIGH PSI
GgaALTA1026457-1/2
(RALGPS1)
Chicken
(galGal3)
chr17:11084986-11084987 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CAGTCCCCAGACACAGGAAGA

				
R: 
CCGAGTTCTGGGAGAATTCCG

				
Band lengths: 
107-110

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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