MmuALTA0015000-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127580451-127582820:-
Coord C1 exon
chr10:127582729-127582820
Coord A exon
chr10:127580546-127580602
Coord C2 exon
chr10:127580451-127580545
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CTTCGTGTCCATAGCAACAGGAG
3' ss Score
-0.25
Exon sequences
Seq C1 exon
GCTATGGCTTTGTGGACTTCGACAGTCCGTCATCAGCACAGAAAGCTGTAACTGCACTGAAAGCCAGTGGTGTGCAGGCACAAATGGCAAAG
Seq A exon
GAGCAAGACCCTACAAACTTATACATCTCAAACCTCCCTCTGTCAATGGACGAGCAG
Seq C2 exon
GAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTCATCTCTACTCGGATCCTTCGAGACACTAGTGGGGCCAGCAGAGGGGTCGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-10-13,10-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGTGGACTTCGACAGT
R:
CGAGTAGAGATGACCTGGCCA
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: