MmuALTA0015001-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128143395-128146660:-
Coord C1 exon
chr10:128146602-128146660
Coord A exon
NA
Coord C2 exon
chr10:128143395-128143546
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTTCGTGTCCATAGCAACAGGAG
3' ss Score
-0.25
Exon sequences
Seq C1 exon
GTATGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
Seq A exon
NA
Seq C2 exon
GAGCAAGACCCTACAAACTTATACATCTCAAACCTCCCTCTGTCAATGGACGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTCATCTCTACTCGGATCCTTCGAGACACTAGTGGGGCCAGCAGAGGGGTCGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-13-17,13-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.340
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
NA
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACTAAGGCCATCCTGGA
R:
TCCTGCTCGTCCATTGACAGA
Band lengths:
103-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types