Special

MmuALTA0015174-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000026482 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
Coordinates
chr1:154521990-154613435:-
Coord C1 exon
chr1:154613037-154613435
Coord A exon
NA
Coord C2 exon
chr1:154521990-154522153
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTC
5' ss Score
4.57
3' ss Seq
GTATTTTATTCTTCCAGCAGATT
3' ss Score
7.01
Exon sequences
Seq C1 exon
GGTCTTGGGCTGGAGGCTATGGGCACCTCGGGAGCGTGGCCTGGAGTGCTGCTGCCGCCGCCGCTGTCGGTGCCAGCCGCTGGTTGTTGGGGTCCGGTGTGAAGTGTGGGTGACCGGACTCGCGCGTGGGGTGCGATGGACTGGCTGCAGAACCTAGTCCCCTGCAGTCTGCAGGAGTATGAGGCAAAGTGATGCCCAGCTCGGAACTAGTGATCGGAGCCCTCCATTCGGACCGTGCGCCGCCGGGGGCTGCCTTCCCGAGCTGAGAGCCCCTTCCCCGGCTTGGACTCTTGGCACGCTGTCGGTGGGAGGTCCCCAAGGACGGAATCGAAAAGGTCACTTCTTACCTGTCAGTGCTGTGTGACAGCATCGCGACCGGACCTGCAGAATCTGAACTAG
Seq A exon
NA
Seq C2 exon
ATTCGTAATGCCTCCTGCTTACCTCTTTCAAGATGGAGGGGACATCTGTGGGAGAGCCTACTCAAGTGGTGTCTAAAGTCAAACTTTCCACAAAAGGAGAAAACACAGGACACTGGCTGGTGGATGATCATGCTCGAATATGGGAAGTTTTGAAGACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026482-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.345
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000107490





     
                   









    
Main Skipping Isoform:
ENSMUSP00000120504





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000107488
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:183711259-183711260 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:66270450-66270451 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCGGACCTGCAGAATCTGAAC

				
R: 
ACCACTTGAGTAGGCTCTCCC

				
Band lengths: 
94-97

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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