MmuALTA0015372-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000044628 | Rnf208
Description
ring finger protein 208 [Source:MGI Symbol;Acc:MGI:1916096]
Coordinates
chr2:25242938-25243397:+
Coord C1 exon
chr2:25242938-25243011
Coord A exon
chr2:25243172-25243276
Coord C2 exon
chr2:25243277-25243397
Length
105 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCACCGGCTGCCCCTTGCAGTCC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGGACTGCTGACCTCTGCTACAGGAGGAGGCCCCTCCACGCCCCCTTGCCAGCTTCAGCAGACAGAGACCCTGG
Seq A exon
TCCACAGAGTAACCGTGGTCCTCACCAGGCCTGGCAGGACCAGGATGCAGCCCCTTCTCTTCCCCCACGGCCCCACCCAACACCCCCACCTGTGCCAACGTCCAG
Seq C2 exon
TCTGACTGTAGAGAGCCGGATGCCAGCTGACCCTGGGCCTGAGGTGGGCAGTGGATGGCCGGGCCTCCTCATGTCCTGCCTGAAAGGCCCCCATGTCATCCTCAAAATGGAGGCCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044628-3-6,3-5,3-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF136391=zf-RING_2=WD(100=18.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGCTGACCTCTGCTACA
R:
CTTCATGGCCTCCATTTTGAG
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types