MmuALTA0015543-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000062647 | Rpl7a
Description
ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1353472]
Coordinates
chr2:26911006-26912155:+
Coord C1 exon
chr2:26911006-26911126
Coord A exon
chr2:26912053-26912108
Coord C2 exon
chr2:26912109-26912155
Length
56 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
AAGCTTGCCCACAAGTACAGGCC
3' ss Score
-2.42
Exon sequences
Seq C1 exon
CCCAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCCGCCGTCGTCAAGAAGCAGGAGGCCAAGAAGGTGGTCAACCCTCTGTTCGAGAAGAGGCCCAAGAACTTCGGCATTG
Seq A exon
GCCAGAGACAAAGCAAGAGAAGAAGCAAAGGCTACTGGCCCGTGCTGAGAAGAAAG
Seq C2 exon
CTGCTGGCAAAGGCGACGTCCCAACTAAGAGACCACCTGTCCTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062647-2-5,2-4,2-3,2-2-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.708
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=PU(17.9=35.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGGAAGAAGGCCAAGGG
R:
TTAGTTGGGACGTCGCCTTTG
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types