MmuALTA0015695-1/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000034544 | Rsrc1
Description
arginine/serine-rich coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1914130]
Coordinates
chr3:66789626-66935523:+
Coord C1 exon
chr3:66789626-66789704
Coord A exon
NA
Coord C2 exon
chr3:66904880-66935523
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
CTCTCCAAGCTCACTTACAGGCC
3' ss Score
3.16
Exon sequences
Seq C1 exon
AGCTTAAATTGAAGCAAGTTCTGAGGACGCCGGTGGCGCCGTGGTTAGAAGAGGGGGTTCCAGGTCCCCACGTCGGGAG
Seq A exon
NA
Seq C2 exon
GCCCTCCAAGCAGTACAACAAGAGGTCTGGAAGCCGCTGGCCGCTGCCTATCAGGACCAACAAGACCAGCCTGTGATACCACACCCCTTCCGTGTCGGCGACACCGTGTGGGTACGCCGGCACCAGACTAAGAACTTGGAACCTCGCTGGAAAGGACCCTACACCGTCCTGCTGACCACCCCCACCGCTCTCAAAGTAGACGGCATCGCTGCGTGGATCCACGCCGCTCACGTAAAAGCGGCGACAACCCCTCCGGCCGGAACAGCATCAGGACCGACATGGAAGGTCCAGCGTTCTCAAAACCCCTTAAAGATAAGATTAACCCGTGGGCCCCCCTGATAGTCCTGGAGATCTTAATAAGGGCAGGAGTATCAGTACCACATGACAGCCCTCATCAGGTCTTCAATGTTACTTGGAGAGTTACCAACTTAATGACAGGACAAACAGCTAATGCTACCTCCCTCCTGGGGACAATGACCGATGCCTTTCCCAAACTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034544-1-15,1-14,1-13-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAAGTTCTGAGGACGC
R:
CGGCTTCCAGACCTCTTGTTG
Band lengths:
106-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: