MmuALTA0015752-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039656 | Rxrb
Description
retinoid X receptor beta [Source:MGI Symbol;Acc:MGI:98215]
Coordinates
chr17:34036625-34036964:+
Coord C1 exon
chr17:34036625-34036757
Coord A exon
NA
Coord C2 exon
chr17:34036873-34036964
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
3' ss Seq
ACCTGCAGGTCCCTCTCCAGGGT
3' ss Score
5.34
Exon sequences
Seq C1 exon
GCTGGAACGAGCTCCTCATTGCGTCCTTCTCCCATCGGTCCATTGATGTCCGAGATGGCATCCTCCTGGCCACGGGTCTTCATGTGCACAGAAACTCAGCCCATTCCGCAGGCGTGGGAGCCATCTTTGATCG
Seq A exon
NA
Seq C2 exon
GGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACAGAGCTTGGCTGCCTGCGGGCAATCATACTGTTTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039656-16-16,16-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(23.5=100)
A:
NA
C2:
PF0010425=Hormone_recep=FE(16.9=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACAGAAACTCAGCCCAT
R:
TTGTCCATCCTCATGTCACGC
Band lengths:
98-110
Functional annotations
There are 1 annotated functions for this event
PMID: 9150434
A Four-Amino-Acid Insertion in the Ligand-Binding Domain Inactivates hRXRbeta and Renders Dominant Negative Activity
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types