MmuALTA0015863-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038095 | Sbno1
Description
strawberry notch homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2384298]
Coordinates
chr5:124410341-124413289:-
Coord C1 exon
chr5:124413185-124413289
Coord A exon
NA
Coord C2 exon
chr5:124410341-124410379
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTTGTTTTCTTTTTTAGCAGCAG
3' ss Score
4.74
Exon sequences
Seq C1 exon
TCGGTGCCACTTAGTGCATTAGAACTAGGGTTGGAGACAGAAGCAGCAGTTCCTGTCAAACAAGAGCCAGAGCCGATGTCCACTCCCGCACTGTTAAATGTGAGG
Seq A exon
NA
Seq C2 exon
CAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038095-8-16,8-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.873
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACAGAAGCAGCAGTTCC
R:
ACGTTGTAGTGGATGGAGGCT
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types