MmuALTA0016623-1/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:27024183-27024793:-
Coord C1 exon
chr2:27024585-27024793
Coord A exon
NA
Coord C2 exon
chr2:27024183-27024251
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TACTGATGCGCTTTCTGCAGCAG
3' ss Score
4.96
Exon sequences
Seq C1 exon
GTCTGCTGCTACCTTGGCGATGGCTTGCTGTGGCTGGAGAGGGGCCGGTTCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCTCCTCGCTTCTTGCTCTCAAAGAGCCGGGATGAGGAGGCACTGCAGGCGCTGACCTGGCTGCGAGCTGACTCCGAGGTCCATTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
Seq A exon
NA
Seq C2 exon
CAGCTGACAGGCATCACACCCATCCTGGTGTACCTACAGACCATCTTCGACAACACATCCGTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067-6-11,6-10,6-9,6-8-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.3=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGTCCATTGGGAGTTTG
R:
ACCACGGATGTGTTGTCGAAG
Band lengths:
115-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types