MmuALTA0016743-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:24434104-24434352:+
Coord C1 exon
chr5:24434104-24434239
Coord A exon
chr5:24434338-24434346
Coord C2 exon
chr5:24434347-24434352
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CAGTGTCCTCTGTCTACTAGCCA
3' ss Score
4.44
Exon sequences
Seq C1 exon
GAGCTGTGCTCTTAGACCTCGATCAGCAGACCCTGCCTGGGGTGGCCCATCAGGTGGTCGAGCAGATGGTCATCTCTGACCAGATCAAGGCAGAGGATAGAGCCAATGTGCTACGGGCCCTCCTGCTAAAGCACAG
Seq A exon
CCACCCAAG
Seq C2 exon
TGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962-35-25,35-24,35-23-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(16.7=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types