Special

MmuALTA0016747-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75543037-75543496:+
Coord C1 exon
chr1:75543037-75543188
Coord A exon
NA
Coord C2 exon
chr1:75543390-75543496
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
GCCCCCTTCTTCTCACCCAGGGT
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTGGACTGCAGGCTCCGGCGCCTGCGTCCGCCTGGCCGGGCTCTGCGCGGCGAGAGGCCGGACGGGAACCCGGCAGCCGCGCCCCGGAGCTTGCGGGGAGGGACATGGGGCGCGGCGGCTCTCCCAAGCCCCGCAGGTTCCGGAGCCCGGAG
Seq A exon
NA
Seq C2 exon
GGTTTGGGTCCCATAGTGATTGAGAGACTCCTAAGTCTTCAGTCTTCAGCCCTGCCATGGCTAATGGGGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-1-6,1-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000122749





     
                   









    
Main Skipping Isoform:
ENSMUSP00000109173





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000027415, ENSMUSP00000116747, ENSMUSP00000120078
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr2:220492664-220492665 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr2:108273077-108273078 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAGCTTGCGGGGAGGGAC

				
R: 
CCATTAGCCATGGCAGGGC

				
Band lengths: 
133-176

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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