MmuALTA0016750-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83227507-83230158:+
Coord C1 exon
chr6:83227507-83227565
Coord A exon
chr6:83229958-83229979
Coord C2 exon
chr6:83229980-83230158
Length
22 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTCTGTGCTTGGTCTCCAAGTAC
3' ss Score
3.36
Exon sequences
Seq C1 exon
TGAACACAACCACGGTCAATGCCTCAGCCCCACTGGCACCAAACACCAACACGTCTCTG
Seq A exon
TACACCCCCCTTAACCTCACAG
Seq C2 exon
CGCTGGACTGGTCCCTGCTGAGCAAGAAGGAGTGCCTGAGCTACGGCGGGCGCCTGCTCGGGAGCTCCTGCCAGTTCGTCCCAGACCTGGCGCTCATGTCCTTCATCCTTTTCTTTGGGACTTACTCCATGACCTTGACTCTGAAGAAATTCAAGTTCAGCCGCTATTTTCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-20-19,20-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(3.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACAACCACGGTCAATGC
R:
CGTAGCTCAGGCACTCCTTCT
Band lengths:
103-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: