MmuALTA0016754-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15603723-15605211:+
Coord C1 exon
chr14:15603723-15603828
Coord A exon
chr14:15605050-15605181
Coord C2 exon
chr14:15605182-15605211
Length
132 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TCCCTCTCCTGCCCATTCAGGAG
3' ss Score
9.41
Exon sequences
Seq C1 exon
ATGTGTATGTGCTGAGCCATCTAACCCTAGCAACGAAACTCTAGAACTGTGGAAGAGGAAGAATATAACAGCATACAGTGTTTCCTGGGGCAACCTTACTGTTTCT
Seq A exon
GAGTGTAAGACCTTCCATGGTATGTTTGTGGGATCAGCTTGTGGGCCTCATGGACCTTATGTTCCTGACGTGCTCTTCTGGTGTGTCGTCTTGTTTTTCACGACGTTCTTTCTGTCTTCATTCCTCAAGCAG
Seq C2 exon
TTTAAGACCAAGAGATATTTTCCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-22-24,22-23,22-22-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTGAGCCATCTAACCC
R:
CTTGGTAGGAAAATATCTCTTGGTCT
Band lengths:
130-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: