MmuALTA0016758-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36690754-36691180:+
Coord C1 exon
chr18:36690754-36690870
Coord A exon
chr18:36691006-36691087
Coord C2 exon
chr18:36691088-36691180
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGATGACCCACGGGTGGGAGGCT
3' ss Score
-7.71
Exon sequences
Seq C1 exon
ATTCCCCTCGAAACTGCAGGAGGTCACCAGCCTCTCCCGACAGAGTGCTGCCCTAGCAGAAGACAAGCACCATCACGGACCGCACACACCCATCCCAGAATTGCAAAGGACAGGCAG
Seq A exon
GCTCTTTGGGGGTCTTATTCAGGACGTGCGCCGGAAGGCATGTTGGTACACCAGTGATTTCCTGGATGCCCTACACCCCCAG
Seq C2 exon
TGTTTCTCAGCTGTGTTCTACATTTACCTGGCCACAGTCACAAACGCCATCACTTTTGGGGGTCTTCTGGGAGATGCCACTGAAGGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.3=15.0)
A:
NA
C2:
PF0095516=HCO3_cotransp=PU(4.3=56.2)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAAACTGCAGGAGGTCAC
R:
TCCCAGAAGACCCCCAAAAGT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: