MmuALTA0017130-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000018678 | Sp2
Description
Sp2 transcription factor [Source:MGI Symbol;Acc:MGI:1926162]
Coordinates
chr11:96963365-96977711:-
Coord C1 exon
chr11:96977621-96977711
Coord A exon
NA
Coord C2 exon
chr11:96963365-96963441
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
TTCCATCTTTCTCCCAGCAGATC
3' ss Score
10.06
Exon sequences
Seq C1 exon
TCCGGGATTGGCGGGTGCTAGGCGGGCGGTGTCAGGCTCTCGGTGGCGGCGGAGGCGGCGGAGGCCAGGGAGGAAGATGTCGTAATGAGCG
Seq A exon
NA
Seq C2 exon
ATCCACAGATGAGCATGGCCGCCACTGCTGCTGTCAGTCCCAGTGACTACCTGCAGCCTGCTGCTGCTACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018678-3-6,3-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGGAGGAAGATGTCGTA
R:
CTGGGTAGTAGCAGCAGCAGG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types