MmuALTA0017130-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000018678 | Sp2
Description
Sp2 transcription factor [Source:MGI Symbol;Acc:MGI:1926162]
Coordinates
chr11:96824679-96839002:-
Coord C1 exon
chr11:96838935-96839002
Coord A exon
chr11:96824756-96824758
Coord C2 exon
chr11:96824679-96824755
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
TCATTCCATCTTTCTCCCAGCAG
3' ss Score
6.11
Exon sequences
Seq C1 exon
GGGCGGTGTCAGGCTCTCGGTGGCGGCGGAGGCGGCGGAGGCCAGGGAGGAAGATGTCGTAATGAGCG
Seq A exon
CAG
Seq C2 exon
ATCCACAGATGAGCATGGCCGCCACTGCTGCTGTCAGTCCCAGTGACTACCTGCAGCCTGCTGCTGCTACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018678-2-5,2-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGGAGGAAGATGTCGTA
R:
CTGGGTAGTAGCAGCAGCAGG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: