MmuALTA0017536-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3639508-3641004:+
Coord C1 exon
chr8:3639508-3639617
Coord A exon
NA
Coord C2 exon
chr8:3640749-3641004
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
TTTGTCTTTTCTTGTCTCAGTCT
3' ss Score
8.4
Exon sequences
Seq C1 exon
GGGTGAGTGAGGAGAACCTGGCCAAGCTGATCCAGCATGCCAACGTGCAGTCGTACAGCAGCCTCATCCGGAATCTGGAGCAGCTGGGCGGCACTGTCACCAACTCCGCG
Seq A exon
NA
Seq C2 exon
TCTCTTACATCTCTGTGTTTTTCTGTCTCTTATCTCCCATGTCTGTTTGTCTTTACCTGTCTCTCTGTCTCTACACATCATTCTCTGTCTCTCTGCCTCTCTCTCTACCTCTGTTTCTGCCTCTGCCTATCTATGCTTCTCCAGTTCTCTTTGCCTCTGTCTCTCTTTGCTTTTCCTCTGTCTTTCTGTGTCTCTGTCTCTGTTTTTCTTTTCTGTCTCTTTTTGCTGCTGCTTCCCTTTGTCTCTATCTCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626-37-35,37-33,37-32-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.7=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCTGGCCAAGCTGATC
R:
GGCAAAGAGAACTGGAGAAGCA
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types