MmuALTA0017629-4/7 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000014873 | Surf2
Description
surfeit gene 2 [Source:MGI Symbol;Acc:MGI:98444]
Coordinates
chr2:26917428-26919055:+
Coord C1 exon
chr2:26917428-26917531
Coord A exon
chr2:26918865-26918930
Coord C2 exon
chr2:26918931-26919055
Length
66 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CAGTGTAATGAGCTTGCTAGTCT
3' ss Score
-5.2
Exon sequences
Seq C1 exon
GCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGAGGTATCAGAGAGCACTTCATCAAT
Seq A exon
TCTCCTAGATGAAGAGTGTCAGAAACAAGGTGTGGAATATGTCCCTGCCTGCCTTCTACACAAGAG
Seq C2 exon
GAAGAAGAGAGAGGACCAGACGAACAGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGAGGAAGACGCCTTGAGTGACGACAGCATGACAGACCTATACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014873-5-11,5-10,5-9,5-8,5-7,5-6,5-5-4/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.677
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(13.8=100)
A:
NA
C2:
PF054776=SURF2=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTCCCCAGAACACGTGCT
R:
GTCGTCACTCAAGGCGTCTTC
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types