MmuALTA0018105-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038482 | Tfdp1
Description
transcription factor Dp 1 [Source:MGI Symbol;Acc:MGI:101934]
Coordinates
chr8:13370481-13370963:+
Coord C1 exon
chr8:13370481-13370646
Coord A exon
NA
Coord C2 exon
chr8:13370879-13370963
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
GCTGTTGCTCTGTCGTCTAGGCT
3' ss Score
6.48
Exon sequences
Seq C1 exon
GAAGCGGAACAGGAAGGGCGAGAAGAATGGCAAGGGCCTGCGGCATTTCTCCATGAAGGTGTGTGAGAAGGTGCAGAGGAAAGGAACCACCTCCTACAATGAGGTGGCTGACGAGCTGGTGGCAGAGTTCAGCGCTGCCGACAACCACATTCTACCAAACGAATCA
Seq A exon
NA
Seq C2 exon
GCTTATGACCAGAAGAACATCCGGCGGCGTGTCTACGATGCCTTAAATGTGCTAATGGCCATGAACATCATCTCCAAGGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038482-43-31,43-30-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF118163=DUF3337=FE(32.7=100),PF0231915=E2F_TDP=PU(51.6=83.9),PF087815=DP=PU(4.3=7.1)
A:
NA
C2:
PF0231915=E2F_TDP=PD(41.0=70.8),PF087815=DP=PU(4.1=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAGAAGGTGCAGAGGA
R:
GCCGGATGTTCTTCTGGTCAT
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types