MmuALTA0018611-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34690142-34692588:+
Coord C1 exon
chr17:34690142-34690432
Coord A exon
chr17:34692289-34692294
Coord C2 exon
chr17:34692295-34692588
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTAGACTCTCTCTCACCAGCAC
3' ss Score
5.81
Exon sequences
Seq C1 exon
ACAAACAACCAGAAGAAAAGCCCCCCCTTGAGCCACGCCTGGAGGAGTTGACAGTGACTGGTGTAACCCCCAATTCTGTGAGCCTCTCGTGGATAGTTCCTGAGGGACAGTTTGACTCCTTCGTGGTCCAGTACCAGGACAGGGATGGGCAGCCCCGGGAGGTACCACTGACAGCAGAACAGCGTGAGGTCACTGTCCTTGACTTGGACCCTGCAAGAATATACAAAATGAACTTCTACGGGCTACACGGTAGACGACGTGTGGGCCCCCTCTCCGTGTCAGCAATGACAG
Seq A exon
CACCAG
Seq C2 exon
CTCCAGCCACCGAGGCCTCCAAGCTGCTCCCAGAACCACGACTGGGGGAACTAACAGTGACAGATGTGACCCCGGACTCAGTGGGCCTCCTGTGGACTGTCCCTGAGGGTGAATTCGACTCCTTCACGGTCCAGTACAAGGACAGGGATGGCCAGCCCCACGTGGTGTCTGTGGCAGCAGACCTACGGGAGGTCACCATCCCAGGCCTGGAGCCCTCTCGCAAGTACAAGTTCCTGCTCTTTGGGGTCCAAGATGGGAAAAGACGCAGCCAGGTCTCTGTAGAGGCGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-24-17,24-16,24-15-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NA
C2:
PF0004116=fn3=WD(100=78.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCGTGTCAGCAATGAC
R:
CTGAGTCCGGGGTCACATCT
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types