MmuALTA0018870-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57401063-57401895:+
Coord C1 exon
chr17:57401063-57401211
Coord A exon
chr17:57401777-57401779
Coord C2 exon
chr17:57401780-57401895
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTTTTTTTCCATTTCTCAAGCAG
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACGCTAGGCCCCCTGATCCCCCAACTACTGCCCCACCTGATAGCAGCAGTAGCAGCACCAACAGTGGATCCCAGGACAATAAGGAGAG
Seq A exon
CAG
Seq C2 exon
CTCAGAAGAGCCCCCTTCAGAAGGCCAGGACACCCCCATCTATACTGAGTTCGATGAGGACTTTGAGGAGCCTGCATCCCCTATCGGCCAGTGTGTGGCTATCTACCATTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487-14-20,14-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=0.876
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
A:
NA
C2:
PF0001823=SH3_1=PU(14.6=17.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACCTGATAGCAGCAGTA
R:
TATAGATGGGGGTGTCCTGGC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: