MmuALTA0019064-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:75257349-75261486:+
Coord C1 exon
chr17:75257349-75257460
Coord A exon
chr17:75261347-75261385
Coord C2 exon
chr17:75261386-75261486
Length
39 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTT
5' ss Score
3.85
3' ss Seq
GCTGCTTTGTCATCCTGTAGATG
3' ss Score
8.23
Exon sequences
Seq C1 exon
GCATTCCAGTGTCTCTCGAAGGCGTACAAGTGTGACACACAGTCCAGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGACTCGCTCATG
Seq A exon
ATGAACAGCGCTAATGCCTTCCCTGCGTTCATCTTGCAG
Seq C2 exon
TGGCTATGAAATGCGCTGAGAGCAAGTCCATTCCCCAGGAAGCTGTACAAACACTTTCTTCAGTTCGACTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-20-24,20-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTCTCGAAGGCGTACA
R:
TCTCAGCGCATTTCATAGCCA
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: