MmuALTA0019065-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74862046-74863437:+
Coord C1 exon
chr17:74862046-74862146
Coord A exon
NA
Coord C2 exon
chr17:74863337-74863437
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTGCTTTTACATTGCAGCAGAAT
3' ss Score
4.19
Exon sequences
Seq C1 exon
TGGCTATGAAATGCGCTGAGAGCAAGTCCATTCCCCAGGAAGCTGTACAAACACTTTCTTCAGTTCGACTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
Seq A exon
NA
Seq C2 exon
AATTTTACAGATGTGGTAAGTGGAGAAGTCTCTGGAGAGCTCGCCAGTGAAATAGCAGCTGTGAATGCTCTGGAGGCAGAGCTGCAAGACCTCAGCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-39-42,39-41-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGCTTGTTATCCAAAGCA
R:
CCTCCAGAGCATTCACAGCTG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types