MmuALTA0019065-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:75261386-75262777:+
Coord C1 exon
chr17:75261386-75261486
Coord A exon
chr17:75262674-75262676
Coord C2 exon
chr17:75262677-75262777
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTACTGCTTTTACATTGCAGCAG
3' ss Score
6.89
Exon sequences
Seq C1 exon
TGGCTATGAAATGCGCTGAGAGCAAGTCCATTCCCCAGGAAGCTGTACAAACACTTTCTTCAGTTCGACTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
Seq A exon
CAG
Seq C2 exon
AATTTTACAGATGTGGTAAGTGGAGAAGTCTCTGGAGAGCTCGCCAGTGAAATAGCAGCTGTGAATGCTCTGGAGGCAGAGCTGCAAGACCTCAGCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-22-26,22-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGCTTGTTATCCAAAGCA
R:
CCTCCAGAGCATTCACAGCTG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: