MmuALTA0020123-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59861688-59862726:-
Coord C1 exon
chr2:59862620-59862726
Coord A exon
NA
Coord C2 exon
chr2:59861688-59861737
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CCTGCTGTGTTTTAAAGCAGGAA
3' ss Score
6.36
Exon sequences
Seq C1 exon
GTATGTTACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCAATGGACAAGACAGTGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAG
Seq A exon
NA
Seq C2 exon
GAAGCATGAACGACCCGCTGAAACATTTCACTGAAGAATGGTCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-19-19,19-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.2=73.0)
A:
NA
C2:
PF0764712=SAM_2=PU(74.2=81.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCTACTGGTTCAATGGACA
R:
AATGTTTCAGCGGGTCGTTCA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types