MmuALTA0020351-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137820176-137822154:-
Coord C1 exon
chr5:137822014-137822154
Coord A exon
chr5:137820303-137820305
Coord C2 exon
chr5:137820176-137820302
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACA
5' ss Score
6.25
3' ss Seq
CTGTCACCATTTCCTTTCAGAAG
3' ss Score
8.21
Exon sequences
Seq C1 exon
ACAGCCCTTGTCTGCAGAACCCCTGTCACAATGATGGCCGGTGTGAGGAGCAGGGGGCCACCTTCATCTGCCACTGTGACTTCGGTTATGGAGGAGAATTCTGCACAGAGCCTCAGGATATCACAACCAGAAAAAAGATAG
Seq A exon
AAG
Seq C2 exon
CATCCAGCTTAGTGGCCATCCTGCCGGGAGTGCTTGTGATGGTGTTAGTCCCTGTCTTACTGCCCAGAGTGTATGTTTACATGGCAACAAGAACAACCATGGGGAGGAGGAGGATGAAGAGGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-92-94,92-93-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTTCATCTGCCACTGTG
R:
AGGATGGCCACTAAGCTGGAT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: