Special

MmuALTA0020507-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000036898 | Zfp157
Description
zinc finger protein 157 [Source:MGI Symbol;Acc:MGI:1919404]
Coordinates
chr5:138896208-138897543:+
Coord C1 exon
chr5:138896208-138896317
Coord A exon
chr5:138897103-138897106
Coord C2 exon
chr5:138897107-138897543
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
ACAGATTCTTTTGTCTCAAGGCA
3' ss Score
4.24
Exon sequences
Seq C1 exon
GTGTTCTTGAAGTTTATACTCCAAATGAGAGTTGCCTGGAAAATGCAGAGAGTCGTATGTGGCCAGTGGGAAGCATCAACAGAAATCTTTCAAATAAAGAGATGATTGAA
Seq A exon
GCAG
Seq C2 exon
AAATGAAGGTTCAACTGGAACTTCCCCGAGGTACAAAACCCTATGAGTGTAAACCGTGTATGAAAATGGTCAGCCTGCCATCGCAGTGCAGCAAGCAGCATGCATACTATCCAAGTGTGAAACCATACGAATGGAAGGAATGTCAGAAAGCTTTCTGTTACAAGTCAGCGCTCACTCAACACCAGAGAGCTCGTACAAGATTGAAGATCTATCAGTGTACAGAATGCAAGAAAGCTTTCTCCTCCAAATCAGAACTCACTGTGCATCATAGAATTCATACTGGTGAGAAGCCCCATGCATGTGAAGAATGTGGGAAAGCTTTCTATCGTAAGTCAACCCTTACAGTACATCAGAAAACTCATAGAGGTGAGAAACCTTACGAATGTAAAGAATGTTGGAAAGCTTTCTATTATAAGTCAACCCTCACTGAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036898-9-6,9-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.008 A=NA C2=0.097
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000083018





     
                   









    
Main Skipping Isoform:
ENSMUSP00000098093





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000106537, ENSMUSP00000125824
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:75787469-75787470 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:60600648-60600648 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGAGAGTCGTATGTGGCCAGT

				
R: 
AGGGTTTTGTACCTCGGGGAA

				
Band lengths: 
106-110

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"