MmuALTA0020509-1/2 @ mm10

Alternative 3'ss

Gene

ENSMUSG00000050954 | Zfp169

Description

zinc finger protein 169 [Source:MGI Symbol;Acc:MGI:1915161]

Coordinates

chr13:48491356-48498418:-

Coord C1 exon

chr13:48498323-48498418

Coord A exon

NA

Coord C2 exon

chr13:48491356-48491393

Length

0 bp

Sequences

Splice sites

5' ss Seq

CAGGTAAGA

5' ss Score

10.77

3' ss Seq

TACTGCTTTCTCTCTAGCAGAAC

3' ss Score

7.47

Exon sequences

Seq C1 exon

GAATTGCCTTTTCCAAACCAAAACTCATCACGCAGCTGGAACAAGGGGCAGAACCCTGGAGAGATGGCAGCGGATGCTTTCTGGACCTTTGTCCAG

Seq A exon

NA

Seq C2 exon

AACCCAGGACAGAATTAGAGCCCTCTCTTTCGTCCCCG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000050954-10-6,10-5-1/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.030 A=NA C2=0.130

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.6),PF097235=Zn-ribbon_8=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)

Main Inclusion Isoform:

ENSMUSP00000105737