MmuALTA0020548-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000062040 | Zfp27
Description
zinc finger protein 27 [Source:MGI Symbol;Acc:MGI:99174]
Coordinates
chr7:30688919-30691123:-
Coord C1 exon
chr7:30691073-30691123
Coord A exon
NA
Coord C2 exon
chr7:30688919-30689062
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
3' ss Seq
ACAGCACTTCTTCCTCACAGCTC
3' ss Score
6.95
Exon sequences
Seq C1 exon
GTGCTGCTTCCATTGAGTCTTAAGGGCAAGAAGTCATCCGAGATGATTCCG
Seq A exon
NA
Seq C2 exon
CTCTGACTGAACTCATAGAGGACCGCTAAGCTTCTGGTTGCTGAGAGGACAGGGTCTAGACCCAGCGTGATCATGCCAACTGACTGGACTTCAACCCTGGAAGCTACACCACTGGCCCCAGAGGATCTTGGGAGCTCATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062040-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAAGAAGTCATCCGAGA
R:
GCATGATCACGCTGGGTCTAG
Band lengths:
105-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: