MmuALTA0020570-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000047473 | Zfp30
Description
zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
Coordinates
chr7:30569017-30571322:+
Coord C1 exon
chr7:30569017-30569920
Coord A exon
chr7:30571194-30571237
Coord C2 exon
chr7:30571238-30571322
Length
44 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TTTTTTTTACATTTTGGAAGCTC
3' ss Score
4.53
Exon sequences
Seq C1 exon
ACGGTGGAGATACCCTGTGCAGAACCTTAGATTCCCGGCGGGCCTGGGGAGCAGAGAACCGGGGGACACCTCGGACCTAAGGCTGGGCAGCCCCGGACTGGTAACTGGTGAAGCAGAGTGGCCGAAGCAGCAAACTCGGGCACGGGTGACTGTGGGCTGCTGTAGTCTATCTCGCTTGCTGGGATCATACGGATGGGGTCAGCCTGGAGCCCTGAAGCTTGGAAGGGGATTCTGATCAATTTCAGAAAAGCGTAGGGGTGAGGCCAGAGGACGTGGTGGCATACACCTGACTTCTCGGGATTTGGGAGGTGGAGGCAGGGGGAGTAGGCGCTCAAGGTCATTCTCTACTGCCTAACGTTGGGTTGCAAGAGAGAAAAAGAAAAGAGAAGAAGAAGGAAAGAAGAGAAAAGAAAAGAAACAAGGCCTGGAGTGTCTGCCAGTCTTCAGAAGAGACCCTAGAAGCCAGCAGCTACTACTTCTGTTTAAAACAGAGATTATGT
Seq A exon
CTCTAGAACAGTTCTGCTCTCATGGCTGCACCCTCTCCCTCCAG
Seq C2 exon
CTCTAGCCTCTGTGAACGGCTTCACCAGGACATGATCCTCGAGGAAGAACAAGCCAGTTCTTGCGATTCTGGAATCATGGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047473-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGTCTGCCAGTCTTCA
R:
CTGGCTTGTTCTTCCTCGAGG
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: