MmuALTA0020570-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000047473 | Zfp30
Description
zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
Coordinates
chr7:29783998-29786303:+
Coord C1 exon
chr7:29783998-29784901
Coord A exon
chr7:29786219-29786224
Coord C2 exon
chr7:29786225-29786303
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
GCTGCACCCTCTCCCTCCAGCTC
3' ss Score
9.24
Exon sequences
Seq C1 exon
ACGGTGGAGATACCCTGTGCAGAACCTTAGATTCCCGGCGGGCCTGGGGAGCAGAGAACCGGGGGACACCTCGGACCTAAGGCTGGGCAGCCCCGGACTGGTAACTGGTGAAGCAGAGTGGCCGAAGCAGCAAACTCGGGCACGGGTGACTGTGGGCTGCTGTAGTCTATCTCGCTTGCTGGGATCATACGGATGGGGTCAGCCTGGAGCCCTGAAGCTTGGAAGGGGATTCTGATCAATTTCAGAAAAGCGTAGGGGTGAGGCCAGAGGACGTGGTGGCATACACCTGACTTCTCGGGATTTGGGAGGTGGAGGCAGGGGGAGTAGGCGCTCAAGGTCATTCTCTACTGCCTAACGTTGGGTTGCAAGAGAGAAAAAGAAAAGAGAAGAAGAAGGAAAGAAGAGAAAAGAAAAGAAACAAGGCCTGGAGTGTCTGCCAGTCTTCAGAAGAGACCCTAGAAGCCAGCAGCTACTACTTCTGTTTAAAACAGAGATTATGT
Seq A exon
CTCTAG
Seq C2 exon
CCTCTGTGAACGGCTTCACCAGGACATGATCCTCGAGGAAGAACAAGCCAGTTCTTGCGATTCTGGAATCATGGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047473-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGTCTGCCAGTCTTCA
R:
GATCATGTCCTGGTGAAGCCG
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types