MmuALTA0020581-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000017667 | Zfp334
Description
zinc finger protein 334 [Source:MGI Symbol;Acc:MGI:2388656]
Coordinates
chr2:165208739-165212488:-
Coord C1 exon
chr2:165212426-165212488
Coord A exon
chr2:165208866-165208898
Coord C2 exon
chr2:165208739-165208865
Length
33 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCCTCATCGCTGTTGCTCAGGTC
3' ss Score
5.4
Exon sequences
Seq C1 exon
CCCTTGGATCACCGGTGGTTCCTGGCCCTTTCTTGAGAACGCCTGGAAATGGACAGTACCCAG
Seq A exon
GTCCAGTATCTCAGATGGAACTTGCTCTTTCAG
Seq C2 exon
AGATCAATCTCCTTCAAGGACTTGGCTGTGGACTTCACCCGCGAGGAGTGGCAACGTCTGGGCCCTGCGCAGCGTCTCCTCTACAGGGATGTGATGCTGGAGACCTACAGTAACCTCATCGCGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017667-3-2,3-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGAAATGGACAGTACC
R:
ACATCCCTGTAGAGGAGACGC
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: