Special

MmuALTA0020625-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000034538 | Zfp418
Description
zinc finger protein 418 [Source:MGI Symbol;Acc:MGI:2444763]
Coordinates
chr7:7127266-7134044:+
Coord C1 exon
chr7:7127266-7127392
Coord A exon
NA
Coord C2 exon
chr7:7133944-7134044
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CAGGCTTTCTGTCCTTTCAGCTC
3' ss Score
9.61
Exon sequences
Seq C1 exon
GGCTGTGTAACCTTTGAGGACGTGGCAGTTTACTTCTCCCAGGAAGAGTGGGAGCTCCTGGATGAATCTCAGAGGCTCCTGTATCTTGATGTGATGCTGGAGAATTTTACCCTTATAACCTCACTGG
Seq A exon
NA
Seq C2 exon
CTCATTGGTCTGAAGCAGAGGCTGAAGACAAAACCTGTGCACCACAGATCAGGACTGCAAAGGAAGGTCTACCCACGAAGAAGCCCCATCCCTCTGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034538-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.080
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=WD(100=95.3)

							
A:
NA

							
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=3.2)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000057159





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr19:57686481-57686835 
ALTERNATIVE
HsaALTA1055963-2/3
(ZNF551)
Human
(hg19)
chr19:58101377-58101378 
Rat
(rn6)
chr1:66900351-66900352 
Cow
(bosTau6)
chr18:64977650-64977651 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTAACCTTTGAGGACGTGGCA

				
R: 
GATGTCAGAGGGATGGGGCTT

				
Band lengths: 
222-600

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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