MmuALTA0020625-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000034538 | Zfp418
Description
zinc finger protein 418 [Source:MGI Symbol;Acc:MGI:2444763]
Coordinates
chr7:7174555-7183562:+
Coord C1 exon
chr7:7174555-7174681
Coord A exon
chr7:7180855-7181232
Coord C2 exon
chr7:7181233-7183562
Length
378 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTGTTTTCTCCAACCATAGAAA
3' ss Score
7.37
Exon sequences
Seq C1 exon
GGCTGTGTAACCTTTGAGGACGTGGCAGTTTACTTCTCCCAGGAAGAGTGGGAGCTCCTGGATGAATCTCAGAGGCTCCTGTATCTTGATGTGATGCTGGAGAATTTTACCCTTATAACCTCACTGG
Seq A exon
AAATGAAACCCATAGTTGGATACAAGCAAATGACTGGACACAAGCTAGAAATCTGAGACAGAAATCTGTCAGACAAGTAGATTTGCTCTGAGTGATTCAATTGGTTTATGCCATTTTTTTCCCACTCTCCAGTTGATACAACTTGTATTTTTTCAATCAAAGCAGCTAAAGTCTTAGACAAATATTTTTCTCTTGCATCCTACAAATCATAAGATGATCCAAAAGTAAAACTAAGCATATAATATTAAACAAACAAACAAACAAACAAACAAACAACTAGCCTCTTCTCATGCTGCTCAAAAAGGGGAACCACGTTCAAACATCCTTGGTAATTCCAGCCAGTTGATGTGCTTCATACCAGGCTTTCTGTCCTTTCAG
Seq C2 exon
CTCATTGGTCTGAAGCAGAGGCTGAAGACAAAACCTGTGCACCACAGATCAGGACTGCAAAGGAAGGTCTACCCACGAAGAAGCCCCATCCCTCTGACATCTGTAGCACCGTCCTTAAAGATATCTTGCATCTAAGTGACCTACCCGGGCAGAAACCACATTTGACTGAGGTGTGTACAGACCTCCTGGACCAGAAGCATCACAGAGCCAAGAATTGGTTAAAGAAAGATGTGGACTCCCTTGTGAAGAACTGTATATTCCATGTAGCAGGGAACCCTTCTGTCTGTAGTAAGATTGGCGAGAAATTCCCAGCTGTATGGAATCTTCTCCAACCCAAGGCCATTCCCAAAGGTGAGAAACAAAATCAAATTAAGTGTAGAAAGGCTTTTCACTCAGAGAAAAATAACTCTAAGTCAGATAAATATAACAAATCTTCCAGCCCCCAACACAGGCTTCATGAATATCCAAGACTTTGCAGTGGAAAGGAGGGGTTTGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034538-4-4,4-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=3.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCTCCTGGATGAATCT
R:
AGGGTTCCCTGCTACATGGAA
Band lengths:
357-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types