Special

MmuALTA0020632-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000059475 | Zfp426
Description
zinc finger protein 426 [Source:MGI Symbol;Acc:MGI:1920248]
Coordinates
chr9:20275589-20276225:-
Coord C1 exon
chr9:20276143-20276225
Coord A exon
NA
Coord C2 exon
chr9:20275589-20275689
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTTATCTCTCTTATTAGCAGACA
3' ss Score
6.86
Exon sequences
Seq C1 exon
AATGGAAATTACAGCTCGAAACCAAATGTTCAGCGTTCCAGCAGGAATTTCTGAGGGGTAACATATCCAGTAGAATGCAAATG
Seq A exon
NA
Seq C2 exon
ACAGGAATCAACAGAGGAAGGGAGCTCTGTGATGGGACGCAATATGGAGACTTCTTCAGTGAACTCTCACCCCTCAGGACAGATATGAAAACTCAACCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059475-16-19,16-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.063
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000126446





     
                   









    
Main Skipping Isoform:
ENSMUSP00000127045





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000079250, ENSMUSP00000111224, ENSMUSP00000127914, ENSMUSP00000129727, ENSMUSP00000130945
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:9640313-9640314 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr7:15405444-15405445 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCAAATGTTCAGCGTTCCAGC

				
R: 
TCCCATCACAGAGCTCCCTTC

				
Band lengths: 
99-102

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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