MmuALTA0020658-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000043059 | Zfp513
Description
zinc finger protein 513 [Source:MGI Symbol;Acc:MGI:2141255]
Coordinates
chr5:31502608-31503134:-
Coord C1 exon
chr5:31503025-31503134
Coord A exon
chr5:31502757-31502918
Coord C2 exon
chr5:31502608-31502756
Length
162 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCGTGTCCCACTACTCGAGCCA
3' ss Score
-0.69
Exon sequences
Seq C1 exon
CGGCCGCGCACTAAGTGCGGAGAGTGAAGTTGAGGAACCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGTCAGCTGTGTGGGGGGCCGACAG
Seq A exon
CCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACGCGACATACCCGCACCCATACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAG
Seq C2 exon
CCTGGGCAACCTGAGGCGGCATCAGCGCACCCACACAGGGCCTCCCACTCCTCCCTGCCCAACCTGTGGCTTTCGATGCTGTGCTCCACGACCAACCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGACAATGCCCCGACGATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043059-4-7,4-6,4-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGGAGAGTGAAGTTGAGG
R:
CTTCTGATCGTCGGGGCATTG
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: