MmuALTA0020694-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000046311 | Zfp62
Description
zinc finger protein 62 [Source:MGI Symbol;Acc:MGI:99662]
Coordinates
chr11:49213590-49214654:+
Coord C1 exon
chr11:49213590-49213642
Coord A exon
NA
Coord C2 exon
chr11:49214555-49214654
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
3' ss Seq
TTTTCTTGTTTTTCTATGAGGTG
3' ss Score
-0.74
Exon sequences
Seq C1 exon
GTGAAGAAACTGCTGTACAAAGAAGTTAAATAGCTATCCCAAAGGTCATATAA
Seq A exon
NA
Seq C2 exon
GTGACATTGAAACTGATTGGTATTGGCTGTGGTTTTGTGCATCAGTTGAACCCATTTTTATGGTACCTTCTGGACTCTTGTTTTAACAGTAGTTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046311-14-15,14-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGAAACTGCTGTACAAAGA
R:
AAAAATGGGTTCAACTGATGCACA
Band lengths:
112-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types